Data Wranglers Anonymous book repository
Preface
This is a collection of tutorials for helping people to get started with a variety of computational resources for sequencing data analysis.
The tutorials are meant to be as generic as possible given that each person’s computing resources might greatly differ with each other.
Who is this for?
This is intended for people who has little to no experience in bioinformatics and would like to get started with some of the computational resources available at Carnegie Science’s BSE division.
Why?
This is an effort to condense the vast amount of resources out there, which can make things confusing and frustrating when it comes to implementation.
Current content
The current collection has the following topics:
- Computing Resources
- BCL Convert
- Cell Ranger
- Nextflow
- Curio
- R and RStudio
Credit
Tutorials are a collective effort of the Genomics Cafe team at Carnegie-Embryology.
- Members at the creation of this repository:
- Javier Carpinteyro Ponce
- Frederick Tan
- Joseph Tran
- Rick Veader
- Xiaobin Zheng
Book template credits
Book design and repository was inspired by and uses portions of the Modern Polars Quarto book by Kevin Heavey, including its _quarto.yml
structure and design elements.
Source repository: kevinheavey/modern-polars
Contributing
This book is free and open source, so please do open an issue if you notice a problem!